Corekaburra: pan-genome post-processing using core gene synteny
نویسندگان
چکیده
منابع مشابه
Gene synteny and evolution of genome architecture in trypanosomatids.
The trypanosomatid protozoa Trypanosoma brucei, Trypanosoma cruzi and Leishmania major are related human pathogens that cause markedly distinct diseases. Using information from genome sequencing projects currently underway, we have compared the sequences of large chromosomal fragments from each species. Despite high levels of divergence at the sequence level, these three species exhibit a strik...
متن کاملAnalysis of the Core Genome and Pan-Genome of Autotrophic Acetogenic Bacteria
Acetogens are obligate anaerobic bacteria capable of reducing carbon dioxide (CO2) to multicarbon compounds coupled to the oxidation of inorganic substrates, such as hydrogen (H2) or carbon monoxide (CO), via the Wood-Ljungdahl pathway. Owing to the metabolic capability of CO2 fixation, much attention has been focused on understanding the unique pathways associated with acetogens, particularly ...
متن کاملThe unified grass genome: synergy in synteny.
The grasses, members of the family Gramineae or Poaceae, are represented by over 10,000 species (Kellogg and Birchler 1993). Three of the domesticated grasses, rice, wheat, and maize, account for about half of total world food production. Although the oldest known grass fossils have been found in paleocene-eocene deposits that are ∼50–60 million years old (Crepet and Feldman 1991), morphologica...
متن کاملWhole Genome Alignments and Synteny Maps
IINTRODUCTION It was not until closely related organism genomes have been sequenced that people start to think about aligning genomes and chromosomes instead of short DNA sequences. There are a large number of algorithms and methods developed for sequence alignment, in order to find conserved sequences across species. Smith & Waterman and Needleman & Wunsch algorithms are among the most popular...
متن کاملAnalysis of Pre-processing and Post-processing Methods and Using Data Mining to Diagnose Heart Diseases
Today, a great deal of data is generated in the medical field. Acquiring useful knowledge from this raw data requires data processing and detection of meaningful patterns and this objective can be achieved through data mining. Using data mining to diagnose and prognose heart diseases has become one of the areas of interest for researchers in recent years. In this study, the literature on the ap...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Journal of open source software
سال: 2022
ISSN: ['2475-9066']
DOI: https://doi.org/10.21105/joss.04910